# importing modules import sys as sys import os import pandas as pd import matplotlib.pyplot as plt # Getting the name of the directory where this file is present. current = os.path.dirname(os.path.realpath(__file__)) # src # Getting the parent directory name where the current directory is present. parent = os.path.dirname(current) # Simulation # Getting the grandparent directory name gparent = os.path.dirname(parent) # RecruitmentSynchronization_SMCs # The path where the plotExp.py is saved mpath = gparent + '\\cellLib\\Scripts' # appending a path sys.path.append(mpath) import plotExp # The properties of traces colors=plt.rcParams['axes.prop_cycle'].by_key()['color'] lines = ['-','--','-.',':'] markers = ['.',',','o','+','x','d'] # Figure file name and titles figfiles=parent+'\\simFig11_906.png' fig_title = 'Primary Fig 11 with 906 entry' plot_title =['Reference -40, -26 mV','Perchlorate -63, -49 mV','',''] labels = ['Original','CellML -40 mV','CellML -26 mV','Original','CellML -63 mV','CellML -49 mV', 'Original','CellML -40 mV','CellML -26 mV','Original','CellML -63 mV','CellML -49 mV'] # Data source dfolder_original=parent+'\\originalData\\' ofilenames=['Fig11A_r.csv','Fig11A_p.csv','Fig11B_r.csv','Fig11B_p.csv'] dfilenames=['simFig11_r906_n40.csv','simFig11_p906_n63.csv','simFig11_r906_n40.csv','simFig11_p906_n63.csv',] dfilenames_1=['simFig11_r906_n26.csv','simFig11_p906_n49.csv','simFig11_r906_n26.csv','simFig11_p906_n49.csv',] dfolder_sim=parent+'\\simulatedData\\' x_var_org ='x' y_var_org ='Curve1' x_vars_sim = ['t','t','t','t'] y_vars_sim = ['output_10/P_o','output_10/P_o','output_10/dQ','output_10/dQ'] x_label=['','','t (ms)','t (ms)'] y_label=['Open probability','Open probability','Charge current /ms','Charge current /ms'] Qmax=23.1 # Build the traces number_trace = 3 number_plot = len(y_vars_sim) trace = [[0] * number_trace for i in range(number_plot)] for plotid, y_var_sim in enumerate(y_vars_sim): odata = pd.read_csv(dfolder_original+ofilenames[plotid]) ox_data=odata[x_var_org].values oy_data=odata[y_var_org].values ndata = pd.read_csv(dfolder_sim+dfilenames[plotid]) ndata_1 = pd.read_csv(dfolder_sim+dfilenames_1[plotid]) nx_data=ndata[x_vars_sim[plotid]].values-200 if plotid==0: ny_data=ndata[y_vars_sim[plotid]].values/0.504850790072875 ny_data_1=ndata_1[y_vars_sim[plotid]].values/0.504850790072875 elif plotid==1: ny_data=ndata[y_vars_sim[plotid]].values/0.98322952985556 ny_data_1=ndata_1[y_vars_sim[plotid]].values/0.98322952985556 else: ny_data=ndata[y_vars_sim[plotid]].values ny_data_1=ndata_1[y_vars_sim[plotid]].values trace[plotid][0]={'dataX': ox_data, 'dataY': oy_data, 'lname': labels[plotid*3+0], 'linestyle':lines[1], 'marker':markers[0], 'linecolor':colors[0],'y2':False} trace[plotid][1]={'dataX': nx_data, 'dataY': ny_data, 'lname': labels[plotid*3+1], 'linestyle':lines[0], 'marker':None, 'linecolor':colors[1],'y2':False} trace[plotid][2]={'dataX': nx_data, 'dataY': ny_data_1, 'lname': labels[plotid*3+2], 'linestyle':lines[0], 'marker':None, 'linecolor':colors[3],'y2':False} # Build the plots # maxH=8.75 inches, width 2.63-7.5 rows,cols = 2,2 left = 0.125 # the left side of the subplots of the figure,0.125 right = 0.9 # the right side of the subplots of the figure,0.9 bottom = 0.15 # the bottom of the subplots of the figure, 0.1 top = 0.75 # the top of the subplots of the figure 0.9 wspace = 0.5 # the amount of width reserved for space between subplots, # expressed as a fraction of the average axis width, 0.2 hspace = 0.25 # the amount of height reserved for space between subplots, # expressed as a fraction of the average axis height, 0.2 lgdfont, labelfont =10, 10 width, height= cols*3.5, rows*3 figs ={ 'width':width, 'height': height, 'rows': rows, 'cols': cols,'left':left,'bottom':bottom,'right':right,'top':top,'wspace': wspace,'hspace': hspace,'fig_title':fig_title,'title_y':1} plots=[] for id in range(4): colid = id%2 rowid = id//2 if id == 0 or id == 1: lgdshow = True bbox_to_anchor = (0.5,1.45) else: lgdshow = False bbox_to_anchor = None iplot={'rowid':rowid, 'colid':colid, 'xlabel': x_label[id], 'ylabel':y_label[id], 'twiny':False, 'ylabel2':y_label[id],'labelcolor':colors[1], 'lgdshow': lgdshow, 'lgdloc':'center', 'bbox_to_anchor':bbox_to_anchor,'lgdncol': 1, 'lgdfont':lgdfont, 'labelfont': labelfont, 'setxlim': True, 'xmin':0, 'xmax': 200, 'setylim': False,'ymin':0, 'ymax':1, 'grid': True, 'gridaxis': 'both', 'plot_title': plot_title[id], 'traces':trace[id] } plots.append(iplot) ids = range(len(y_vars_sim)) subfigs={ids: plots for ids, plots in zip(ids, plots)} fig,axs=plotExp.plotExp(figs,subfigs,figfiles)