# importing modules import sys as sys import os import pandas as pd import matplotlib.pyplot as plt # Getting the name of the directory where this file is present. current = os.path.dirname(os.path.realpath(__file__)) # src # Getting the parent directory name where the current directory is present. parent = os.path.dirname(current) # Simulation # Getting the grandparent directory name gparent = os.path.dirname(parent) # RecruitmentSynchronization_SMCs # The path where the plotExp.py is saved mpath = gparent + '\\cellLib\\Scripts' # appending a path sys.path.append(mpath) import plotExp # The properties of traces colors=plt.rcParams['axes.prop_cycle'].by_key()['color'] lines = ['-','--','-.',':'] markers = ['.',',','o','+','x','d'] # Figure file name and titles figfiles=parent+'\\simFig11_908-comp.png' fig_title = 'Primary Fig 11 with 908 entry' plot_title =['','',] labels = ['CellML Reference -40 mV','CellML Perchlorate -63 mV',] # Data source dfolder_original=parent+'\\originalData\\' dfilenames_r=['simFig11_r.csv','simFig11_r.csv'] dfilenames_p=['simFig11_p.csv','simFig11_p.csv'] dfolder_sim=parent+'\\simulatedData\\' x_vars_sim = ['t','t',] y_vars_sim = ['output_10/P_o','output_10/dQ',] x_label=['t (ms)','t (ms)',] y_label=['Open probability','Charge current /ms'] Qmax=23.1 # Build the traces number_trace = 2 number_plot = len(y_vars_sim) trace = [[0] * number_trace for i in range(number_plot)] for plotid, y_var_sim in enumerate(y_vars_sim): ndata = pd.read_csv(dfolder_sim+dfilenames_r[plotid]) nx_data_r=ndata[x_vars_sim[plotid]].values-200 ny_data_r=ndata[y_vars_sim[plotid]].values ndata = pd.read_csv(dfolder_sim+dfilenames_p[plotid]) nx_data_p=ndata[x_vars_sim[plotid]].values-200 ny_data_p=ndata[y_vars_sim[plotid]].values if plotid==0: ny_data_r=ny_data_r/0.317549 ny_data_p=ny_data_p/0.92084 trace[plotid][0]={'dataX': nx_data_r, 'dataY': ny_data_r, 'lname': labels[0], 'linestyle':lines[1], 'marker':markers[0], 'linecolor':colors[0],'y2':False} trace[plotid][1]={'dataX': nx_data_p, 'dataY': ny_data_p, 'lname': labels[1], 'linestyle':lines[0], 'marker':None, 'linecolor':colors[1],'y2':False} # Build the plots # maxH=8.75 inches, width 2.63-7.5 rows,cols = 1,2 left = 0.125 # the left side of the subplots of the figure,0.125 right = 0.9 # the right side of the subplots of the figure,0.9 bottom = 0.1 # the bottom of the subplots of the figure, 0.1 top = 0.8 # the top of the subplots of the figure 0.9 wspace = 0.5 # the amount of width reserved for space between subplots, # expressed as a fraction of the average axis width, 0.2 hspace = 0.25 # the amount of height reserved for space between subplots, # expressed as a fraction of the average axis height, 0.2 lgdfont, labelfont =10, 10 width, height= cols*3.5, rows*3 figs ={ 'width':width, 'height': height, 'rows': rows, 'cols': cols,'left':left,'bottom':bottom,'right':right,'top':top,'wspace': wspace,'hspace': hspace,'fig_title':fig_title,'title_y':1} plots=[] for id in range(2): colid = id%2 rowid = id//2 if id == 0: lgdshow = True bbox_to_anchor = (1.2,1.1) else: lgdshow = False bbox_to_anchor = None iplot={'rowid':rowid, 'colid':colid, 'xlabel': x_label[id], 'ylabel':y_label[id], 'twiny':False, 'ylabel2':y_label[id],'labelcolor':colors[1], 'lgdshow': lgdshow, 'lgdloc':'center', 'bbox_to_anchor':bbox_to_anchor,'lgdncol': 2, 'lgdfont':lgdfont, 'labelfont': labelfont, 'setxlim': True, 'xmin':0, 'xmax': 200, 'setylim': False,'ymin':0, 'ymax':1, 'grid': True, 'gridaxis': 'both', 'plot_title': plot_title[id], 'traces':trace[id] } plots.append(iplot) ids = range(len(y_vars_sim)) subfigs={ids: plots for ids, plots in zip(ids, plots)} fig,axs=plotExp.plotExp(figs,subfigs,figfiles)