# To reproduce the data needed for IV curve in clamping experiments in associated original paper import clampExp import imp imp.reload(clampExp) sedversions=['0','1','2','3'] for i, sedversion in enumerate(sedversions): simfile='../Patch_clamp_experiment_%s.sedml' % sedversion simFign='FigA1F_%s' % sedversion V_clamp=[-60, 120, 120, -50, 80, 10] paraKeys=['Clamp_parameters/Cai'] paras=[8.97e-5] outKeys=['outputs/I_CaL'] clampExp.clampExp(simFign,simfile,V_clamp,paraKeys,paras,outKeys) simFign='FigA2F_%s' % sedversion V_clamp=[-80, 100, 100, -70, 80, 10] paraKeys=['Clamp_parameters/Cai'] paras=[8.97e-5] outKeys=['outputs/I_CaT'] clampExp.clampExp(simFign,simfile,V_clamp,paraKeys,paras,outKeys) simFign='FigA3F_%s' % sedversion V_clamp=[-90, 50, 50, -50, 80, 10] paraKeys=['Clamp_parameters/Nai'] paras=[4] outKeys=['outputs/I_Na'] clampExp.clampExp(simFign,simfile,V_clamp,paraKeys,paras,outKeys) simFign='FigA4F_%s' % sedversion V_clamp=[-80, 8000, 8000, -60, 80, 10] paraKeys=['Clamp_parameters/Ki'] paras=[140] outKeys=['outputs/I_K1'] clampExp.clampExp(simFign,simfile,V_clamp,paraKeys,paras,outKeys) simFign='FigA5F_%s' % sedversion V_clamp=[-80, 8000, 8000, -60, 80, 10] paraKeys=['Clamp_parameters/Ki'] paras=[140] outKeys=['outputs/I_K2'] clampExp.clampExp(simFign,simfile,V_clamp,paraKeys,paras,outKeys) simFign='FigA6F_%s' % sedversion V_clamp=[-80, 150, 150, -80, 80, 10] paraKeys=['Clamp_parameters/Ki'] paras=[140] outKeys=['outputs/I_KA'] clampExp.clampExp(simFign, simfile, V_clamp,paraKeys,paras,outKeys) simFign='FigA7D_%s' % sedversion V_clamp=[-10, 3000, 3000, -20, -130, -10] paraKeys=['Clamp_parameters/Nai','Clamp_parameters/Ki'] paras=[4,140] outKeys=['outputs/I_h'] clampExp.clampExp(simFign,simfile,V_clamp,paraKeys,paras,outKeys) simFign='FigA8E_%s' % sedversion V_clamp=[0, 100, 100, -60, 50, 10] paraKeys=['Clamp_parameters/Cai'] paras=[8.97e-5] outKeys=['outputs/I_Cl'] clampExp.clampExp(simFign, simfile, V_clamp,paraKeys,paras,outKeys)