import os import sys # Get the directory containing the current file current_dir = os.path.dirname(os.path.abspath(__file__)) sys.path.append(os.path.join(current_dir, '../dataPlot/')) from dataPlot import plot_line2D, subplots_ajdust path_=os.path.join(current_dir, '../Facilitated transporter/CellMLV2/sim_results/') save_fig = {'save_fig': True, 'fig_format': 'png', 'file_path': path_, 'filename': 'GLUT2_fit_ss_new'} filename = path_+'report_task_GLUT2_kinetic.csv' filename_BG_io = path_+'GLUT2_BG_ss_io.csv' filename_BG_oi = path_+'GLUT2_BG_ss_oi.csv' filename_ss_io = path_+'report_task_GLUT2_ss_io.csv' filename_ss_oi = path_+'report_task_GLUT2_ss_oi.csv' Vi=0.09 outputs={'glu':{'component':'main','name':'glu','scale':1}, 'v_io_ss':{'component':'main','name':'v_io_ss','scale':1}, 'v_oi_ss':{'component':'main','name':'v_oi_ss','scale':1}, } subtitle_kwargs={} fig_cfg = {'num_rows': 1, 'num_cols': 2, 'width':8, 'height':3, 'fig_title': None, 'title_y': 1, 'fontsize': 8, 'left': 0.1, 'bottom': 0.25, 'right': 0.95, 'top': 0.98, 'wspace': 0.3, 'hspace': 0.1} fig, axs= subplots_ajdust(fig_cfg, **subtitle_kwargs) plot_cfg = {} line_cfg = {} N=len(outputs) for i, output in enumerate(outputs): if i>0: line_cfg[i] = { 'xdata': (filename,'glu'), 'ydata':(filename,output), 'color': 'b', 'marker': '.', 'linestyle': '', 'label': 'Lowe AG & Walmsley AR (1986)'} line_cfg[3] = { 'xdata': (filename_BG_io,'q_init_Ai'), 'ydata':(filename_BG_io,'v_r1'), 'color': 'k', 'linestyle': '-', 'label': 'Bond graph'} line_cfg[4] = { 'xdata': (filename_BG_oi,'q_init_Ao'), 'ydata':(filename_BG_oi,'v_r1'), 'color': 'k', 'linestyle': '-', 'label': 'Bond graph'} line_cfg[5] = { 'xdata': (filename_ss_io,'q_Ai'), 'ydata':(filename_ss_io,'v_free'), 'color': 'r', 'linestyle': '--', 'label': 'Steady-state Eq 19'} line_cfg[6] = { 'xdata': (filename_ss_oi,'q_Ao'), 'ydata':(filename_ss_oi,'v_free'), 'color': 'r', 'linestyle': '--', 'label': 'Steady-state Eq 19'} line_cfg[7] = { 'xdata': (filename_ss_io,'q_Ai'), 'ydata':(filename_ss_io,'v'), 'color': 'm', 'linestyle': '-.', 'label': 'Steady-state Eqs 19 and 20'} line_cfg[8] = { 'xdata': (filename_ss_oi,'q_Ao'), 'ydata':(filename_ss_oi,'v'), 'color': 'm', 'linestyle': '-.', 'label': 'Steady-state Eqs 19 and 20'} plot_cfg[2] = {'ylabel': 'Outward flux (mM/s)', 'xlabel': '$[A]_i$ (mM)','show_grid': 'both', 'grid_axis': 'both', 'title': '(b)', 'title_y': -0.3, 'line': [1,3,5,7], 'legend': [1,3,5,7]} plot_cfg[1] = {'ylabel': 'Inward flux (mM/s)', 'xlabel': '$[A]_o$ (mM)','show_grid': 'both', 'grid_axis': 'both', 'title': '(a)', 'title_y': -0.3, 'line': [2,4,6,8], 'legend': [2,4,6,8]} plot_line2D(axs, plot_cfg, line_cfg, save_fig)