import numpy as np import matplotlib.pyplot as plt import pandas as pd from scipy import interpolate import math import sys import plot_func # reload (plot_func) import os #caco2-600seconds-with apical GLUT2 data = pd.read_csv('panel_A(inf).csv') data1 = pd.read_csv('panel_A(Vc).csv') data2 = pd.read_csv('panel_A(0.1Vc).csv') data3 = pd.read_csv('panel_A(10Vc).csv') #caco2-600seconds-without apical GLUT2 data4 = pd.read_csv('panel_B(inf).csv') data5 = pd.read_csv('panel_B(Vc).csv') data6 = pd.read_csv('panel_B(0.1Vc).csv') data7 = pd.read_csv('panel_B(10Vc).csv') #caco2-600seconds-without apical GLUT2, n_SGLT*2 data8 = pd.read_csv('panel_C(inf).csv') data9 = pd.read_csv('panel_C(Vc).csv') data10 = pd.read_csv('panel_C(0.1Vc).csv') data11 = pd.read_csv('panel_C(10Vc).csv') #caco2-600seconds-without apical GLUT2, n_SGLT*3 data12 = pd.read_csv('panel_D(inf).csv') data13 = pd.read_csv('panel_D(Vc).csv') data14 = pd.read_csv('panel_D(0.1Vc).csv') data15 = pd.read_csv('panel_D(10Vc).csv') glucose_m = np.array([0, 5, 10, 25, 40, 50]) Y_values = [] data_600 = [data, data1, data2, data3, data4, data5, data6, data7, data8, data9, data10, data11, data12, data13, data14, data15] for j in range(16): temp = [] for i in range(6): Y_last = list(data_600[j][data_600[j].keys()[i]] * 1000)[-1] temp.append(Y_last) Y_values.append(temp) # print(Y) Y = [] for i in range(16): temp = [] for j in range(6): temp.append(Y_values[i][j] - Y_values[i][0]) Y.append(temp) print(Y) mean_value = [] i = 0 while i < 6: avg = (Y[0][i] + Y[1][i] + Y[2][i]+ Y[3][i])/4 mean_value.append(avg) i += 1 # Model: ymc = mean_value # Model error: MSE = [] for i in range(6): tempo=[] for j in range(4): v = (mean_value[i]-Y[j][i])**2 tempo.append(v) MSE.append(tempo) MSE_A = [] for i in range(6): MSE_A.append(math.sqrt((MSE[i][0]+MSE[i][1]+MSE[i][2]+MSE[i][3])/4)) ymc_err = np.array(MSE_A) # Exp(with apical glut2): yec = np.array([0,9.2,14.8,25.2,32.1,35.97]) yec_err = np.array([0,1.2,1.2,0.9,1.2,2.0]) # # Exp: IEC6, 600 s # yei_600 = np.array([0,6.44,9.6,13.6,15.2,15.7]) # yei_err_600 = np.array([0,1.4,1.4,2,2,2]) #set up interpolation for model xi = np.linspace(0,50,100) #interpolate model data tck = interpolate.splrep(glucose_m, ymc, s=0) ymci = interpolate.splev(xi, tck, der = 0) #interpolate model error bar tck = interpolate.splrep(glucose_m, ymc_err, s=0) ymc_erri = interpolate.splev(xi, tck, der = 0) plt.figure(figsize=(12,12)) plt.subplot(221) plt.axis([0, 51, 0, 50]) fig1 = plt.errorbar(glucose_m, yec, yerr=yec_err,fmt='ko', capsize=5, label="Caco2 expt") #~ fig1 = plt.errorbar(x, yei, yerr=yei_err,fmt='go', capsize=5, label="IEC6 expt") fig1 = plt.fill_between(xi, ymci-ymc_erri, ymci+ymc_erri, alpha=0.5, label="model with Apical GLUT2") #~ fig1 = plt.fill_between(xi, ymii-ymi_erri, ymii+ymi_erri, alpha=0.5, label="IEC6 model") fig1 = plt.xlabel('Apical glucose (mM)', fontsize=14) plt.tick_params(axis='both', labelsize=12) fig1 = plt.ylabel('Intracellular glucose (M)', fontsize=14) plt.title('A') plt.legend(loc='upper left', fontsize=12) plt.subplots_adjust(wspace=0.3, hspace=0.3) ####### #without apical GLUT2 mean_value = [] i = 0 while i < 6: avg = (Y[4][i] + Y[5][i] + Y[6][i]+ Y[7][i])/4 mean_value.append(avg) i += 1 # Model: ymc_B = mean_value # Model error: MSE = [] for i in range(6): tempo=[] for j in range(4,8): v = (mean_value[i]-Y[j][i])**2 tempo.append(v) MSE.append(tempo) MSE_B = [] for i in range(6): MSE_B.append(math.sqrt((MSE[i][0]+MSE[i][1]+MSE[i][2]+MSE[i][3])/4)) ymc_err_B = np.array(MSE_B) # Exp: yec_B = np.array([0,9.7,15.3,25.2,32.1,35.97]) yec_err_B = np.array([0,1,1,0.9,1.2,2.0]) #set up interpolation for model xi_B = np.linspace(0,50,100) #interpolate model data tck = interpolate.splrep(glucose_m, ymc_B, s=0) ymci_B = interpolate.splev(xi_B, tck, der = 0) #interpolate model error bar tck = interpolate.splrep(glucose_m, ymc_err_B, s=0) ymc_erri_B = interpolate.splev(xi_B, tck, der = 0) plt.subplot(222) plt.axis([0, 51, 0, 50]) fig1 = plt.errorbar(glucose_m, yec_B, yerr=yec_err_B,fmt='ko', capsize=5, label="expt") #~ fig1 = plt.errorbar(x_60, yei_60, yerr=yei_err_60,fmt='go', capsize=5, label="IEC6 expt") fig1 = plt.fill_between(xi_B, ymci_B-ymc_erri_B, ymci_B+ymc_erri_B, alpha=0.5, label="model without Apical GLUT2") #~ fig1 = plt.fill_between(xi, ymii_60-ymi_erri_60, ymii_60+ymi_erri_60, alpha=0.5, label="IEC6 model") fig1 = plt.xlabel('Apical glucose (mM)', fontsize=14) plt.tick_params(axis='both', labelsize=12) fig1 = plt.ylabel('Intracellular glucose (M)', fontsize=14) plt.title('B') plt.legend(loc='upper left', fontsize=12) ####### #without apical GLUT2, n_SGLT*2 mean_value = [] i = 0 while i < 6: avg = (Y[8][i] + Y[9][i] + Y[10][i]+ Y[11][i])/4 mean_value.append(avg) i += 1 # Model: ymc_C = mean_value # Model error: MSE = [] for i in range(6): tempo=[] for j in range(8,12): v = (mean_value[i]-Y[j][i])**2 tempo.append(v) MSE.append(tempo) MSE_C = [] for i in range(6): MSE_C.append(math.sqrt((MSE[i][0]+MSE[i][1]+MSE[i][2]+MSE[i][3])/4)) ymc_err_C = np.array(MSE_C) # Exp: yec_C = np.array([0,9.7,15.3,25.2,32.1,35.97]) yec_err_C = np.array([0,1,1,0.9,1.2,2.0]) #set up interpolation for model xi_C = np.linspace(0,50,100) #interpolate model data tck = interpolate.splrep(glucose_m, ymc_C, s=0) ymci_C = interpolate.splev(xi_C, tck, der = 0) #interpolate model error bar tck = interpolate.splrep(glucose_m, ymc_err_C, s=0) ymc_erri_C = interpolate.splev(xi_C, tck, der = 0) plt.subplot(223) plt.axis([0, 51, 0, 50]) fig1 = plt.errorbar(glucose_m, yec_C, yerr=yec_err_C,fmt='ko', capsize=5, label="expt") #~ fig1 = plt.errorbar(x_300, yei_300, yerr=yei_err_300,fmt='go', capsize=5, label="IEC6 expt") fig1 = plt.fill_between(xi_C, ymci_C-ymc_erri_C, ymci_C+ymc_erri_C, alpha=0.5, label="without Apical_GLUT2 n_SGLT1*2") #~ fig1 = plt.fill_between(xi, ymii_300-ymi_erri_300, ymii_300+ymi_erri_300, alpha=0.5, label="IEC6 model") fig1 = plt.xlabel('Apical glucose (mM)', fontsize=14) plt.tick_params(axis='both', labelsize=12) fig1 = plt.ylabel('Intracellular glucose (M)', fontsize=14) plt.title('C') plt.legend(loc='upper left', fontsize=12) ####### #without apical GLUT2, n_SGLT*3 mean_value = [] i = 0 while i < 6: avg = (Y[12][i] + Y[13][i] + Y[14][i]+ Y[15][i])/4 mean_value.append(avg) i += 1 # Model: ymc_D = mean_value # Model error: MSE = [] for i in range(6): tempo=[] for j in range(12,16): v = (mean_value[i]-Y[j][i])**2 tempo.append(v) MSE.append(tempo) MSE_D = [] for i in range(6): MSE_D.append(math.sqrt((MSE[i][0]+MSE[i][1]+MSE[i][2]+MSE[i][3])/4)) ymc_err_D = np.array(MSE_D) # Exp: yec_D = np.array([0,9.7,15.3,25.2,32.1,35.97]) yec_err_D = np.array([0,1,1,0.9,1.2,2.0]) #set up interpolation for model xi_D = np.linspace(0,50,100) #interpolate model data tck = interpolate.splrep(glucose_m, ymc_D, s=0) ymci_D = interpolate.splev(xi_D, tck, der = 0) #interpolate model error bar tck = interpolate.splrep(glucose_m, ymc_err_D, s=0) ymc_erri_D = interpolate.splev(xi_D, tck, der = 0) plt.subplot(224) plt.axis([0, 51, 0, 50]) fig1 = plt.errorbar(glucose_m, yec_D, yerr=yec_err_D, fmt='ko', capsize=5, label="expt") #~ fig1 = plt.errorbar(x_600, yei_600, yerr=yei_err_600,fmt='go', capsize=5, label="IEC6 expt") fig1 = plt.fill_between(xi_D, ymci_D-ymc_erri_D, ymci_D+ymc_erri_D, alpha=0.5, label="model Apical_GLUT2 n_SGLT1*3") #~ fig1 = plt.fill_between(xi, ymii_600-ymi_erri_600, ymii_600+ymi_erri_600, alpha=0.5, label="IEC6 model") fig1 = plt.xlabel('Apical glucose (mM)', fontsize=14) plt.tick_params(axis='both', labelsize=12) fig1 = plt.ylabel('Intracellular glucose (M)', fontsize=14) plt.title('D') plt.legend(loc='upper left', fontsize=12) ####### plt.show()