# importing modules from asyncio import constants import sys as sys import os import numpy import pandas as pd import matplotlib.pyplot as plt # getting the name of the directory # where the this file is present. current = os.path.dirname(os.path.realpath(__file__)) # scripts_BG # Getting the parent directory name # where the current directory is present. parent = os.path.dirname(current) # BG gparent = os.path.dirname(parent) # VPH-MIP mpath = gparent + '\\cellLib\\src' # appending a path sys.path.append(mpath) import plotExp colors=plt.rcParams['axes.prop_cycle'].by_key()['color'] figfiles=current+'\\IV_compare.png' # maxH=8.75 inches, width 2.63-7.5 rows,cols = 1,2 width, height= cols*3.5, rows*3 left = 0.15 # the left side of the subplots of the figure,0.125 right = 0.95 # the right side of the subplots of the figure,0.9 bottom = 0.2 # the bottom of the subplots of the figure, 0.1 top = 0.95 # the top of the subplots of the figure 0.9 wspace = 0.4 # the amount of width reserved for space between subplots, # expressed as a fraction of the average axis width, 0.2 hspace = 0.2 # the amount of height reserved for space between subplots, # expressed as a fraction of the average axis height, 0.2 figs ={ 'width':width, 'height': height, 'rows': rows, 'cols': cols,'left':left,'bottom':bottom,'right':right,'top':top,'wspace': wspace,'hspace': hspace} lgdfont, labelfont =11, 12 ofilename=current+'\\INa_HH_open.csv' odata = pd.read_csv(ofilename) ox_data0 = odata['INa_HH_open/V'] oy_data0 = odata['INa_HH_open/I_Na_fA'] nfilename=current+'\\INa_BG_open.csv' ndata = pd.read_csv(nfilename) nx_data0 = ndata['boundary_conditions/V_m'] ny_data0 = ndata['outputs/I_Na'] ofilename=current+'\\IK_HH_open.csv' odata = pd.read_csv(ofilename) ox_data1 = odata['IK_HH_open/V'] oy_data1 = odata['IK_HH_open/I_K_fA'] nfilename=current+'\\IK_BG_open.csv' ndata = pd.read_csv(nfilename) nx_data1 = ndata['boundary_conditions/V_m'] ny_data1 = ndata['outputs/I_K'] ylabels = ['$I_{Na}$','$I_{K}$',] trace1={'dataX': ox_data0, 'dataY': oy_data0, 'lname': 'HH', 'linestyle':'--', 'marker':'', 'linecolor':colors[0],'y2':False} trace2={'dataX': nx_data0, 'dataY': ny_data0, 'lname': 'BG', 'linestyle':'-', 'marker':'', 'linecolor':colors[0],'y2':False} trace3={'dataX': ox_data1, 'dataY': oy_data1, 'lname': 'HH', 'linestyle':'--', 'marker':'', 'linecolor':colors[0],'y2':False} trace4={'dataX': nx_data1, 'dataY': ny_data1, 'lname': 'BG', 'linestyle':'-', 'marker':'', 'linecolor':colors[0],'y2':False} subfigs={'1': {'rowid':0, 'colid':0, 'xlabel': '$V_m$ (mV)', 'ylabel':'$I_{Na}$(fA)', 'twiny':False, 'ylabel2':'','labelcolor':colors[1], 'lgdshow': True, 'lgdloc':'best', 'lgdncol': 1, 'lgdfont':lgdfont, 'labelfont': labelfont, 'setlim': False, 'xmin':0, 'xmax': 1, 'ymin':0, 'ymax':1, 'grid': True, 'gridaxis': 'both', 'traces':{'1':trace1,'2':trace2} }, '2': {'rowid':1, 'colid':0, 'xlabel': '$V_m$ (mV)', 'ylabel':'$I_{K}$(fA)', 'twiny':False, 'ylabel2':'','labelcolor':colors[1], 'lgdshow': True, 'lgdloc':'best', 'lgdncol': 1, 'lgdfont':lgdfont, 'labelfont': labelfont, 'setlim': False, 'xmin':0, 'xmax': 1, 'ymin':0, 'ymax':1, 'grid': True, 'gridaxis': 'both', 'traces':{'1':trace3,'2':trace4} } } fig,axs=plotExp.plotExp(figs,subfigs,figfiles)