# importing modules from asyncio import constants import sys as sys import os import numpy import opencor as oc import pandas as pd # getting the name of the directory # where the this file is present. current = os.path.dirname(os.path.realpath(__file__)) # scripts_BG # Getting the parent directory name # where the current directory is present. parent = os.path.dirname(current) # BG gparent = os.path.dirname(parent) # VPH-MIP mpath = gparent + '\\cellLib\\src' # appending a path sys.path.append(mpath) import simExp filename = current+'\\kineticGHK.csv' data = pd.read_csv(filename) q_data = data['Channels($fmol$)'] qNa_data = q_data[0] qK_data = q_data[1] print(qNa_data,qK_data) simfile = parent+'\\gate_n4_BG_ss.sedml' savefiles=[current+'\\gate_n4_BG_ss'] simulation = oc.open_simulation(simfile) data = simulation.data() ending=data.ending_point() indexStart = int(ending/data.point_interval()) indexEnd = indexStart + 1 varSet = {'initials/q_S0_init':{'constants':qK_data},'outputs/q_S0':{'states':qK_data}} varLoop = {'boundary_conditions/V_m':{'constants':1e-3*numpy.arange(-105, 66, 1)}} varSave = {'boundary_conditions/V_m':{'constants':False},'outputs/q_S0':{'states':False},'outputs/q_S1':{'states':False},'outputs/q_S2':{'states':False}, 'outputs/q_S3':{'states':False},'outputs/q_S4':{'states':False},'outputs/q_S4_norm':{'algebraic':False},} simExp.simExp(simfile, savefiles,ending,indexStart,indexEnd,varSet,varLoop,varSave) simfile = parent+'\\gate_m3h_BG_ss.sedml' savefiles=[current+'\\gate_m3h_BG_ss'] simulation = oc.open_simulation(simfile) data = simulation.data() ending=data.ending_point() indexStart = int(ending/data.point_interval()) indexEnd = indexStart + 1 varSet = {'initials/q_S00_init':{'constants':qNa_data},'outputs/q_S00':{'states':qNa_data}} varLoop = {'boundary_conditions/V_m':{'constants':1e-3*numpy.arange(-90, 41, 1)}} varSave = {'boundary_conditions/V_m':{'constants':False},'outputs/q_S00':{'states':False},'outputs/q_S01':{'states':False}, 'outputs/q_S10':{'states':False},'outputs/q_S11':{'states':False}, 'outputs/q_S20':{'states':False},'outputs/q_S21':{'states':False}, 'outputs/q_S30':{'states':False},'outputs/q_S31':{'states':False},'outputs/q_S31_norm':{'algebraic':False},} simExp.simExp(simfile, savefiles,ending,indexStart,indexEnd,varSet,varLoop,varSave)