# Author: Leyla Noroozbabaee # Date: 12/09/2021 # To reproduce Figure 4 and 5 from original paper, the python file 'ICC_Lees_Green.py' # should be run in the Python console in OpenCOR. import matplotlib.pyplot as plt from pathlib import Path import pandas as pd # Figure Name prefig = 'Fig_4' # To include the extracted data from the original paper Fig4_Extracted_data = 1 # Set Subplot fig, axs = plt.subplots(2, 4, figsize=(14, 7), facecolor='w', edgecolor='k') fig.subplots_adjust(hspace =.25, wspace=.25) axs = axs.ravel() labelfontsize = 12 # Set Title title = ['A High-Cl(NaV)', 'B High-Cl(NSV)','C High-Cl(NSCa)','D High-Cl(CaV)','E High-Cl(NaV)','F High-Cl(NSV)', 'G High-Cl(NSCa)', 'H High-Cl(CaV)'] for i in range(4): filename1 = 'Fig4_%da.csv' % (i + 1) data = pd.read_csv(filename1) Ca_i_Ano1 = data [ 'Ca_i' ] Vm_Ano1 = data [ 'Vm' ] filename2 = 'Fig4_%db.csv' % (i + 1) data = pd.read_csv(filename2) time = data ['time'] Ca_i_no_Ano1 = data ['Ca_i'] Vm_no_Ano1 = data [ 'Vm' ] axs[i].plot(time, Vm_Ano1, 'b', time, Vm_no_Ano1, 'r') axs[i + 4].plot(time, Ca_i_Ano1, 'b', time, Ca_i_no_Ano1, 'r') axs[i].set_title(str(title[i])) axs [ i ].set_xlim([ 0, 15 ]) axs [ i + 4 ].set_xlim([ 0, 15 ]) if i == 3 or i == 7: axs [ i ].plot(time, Vm_Ano1, 'b', time, Vm_no_Ano1, 'r') axs [ i + 4 ].plot(time, Ca_i_Ano1, 'b', time, Ca_i_no_Ano1, 'r') axs [ i ].set_xlim([ 5.1, 20.1 ]) axs [ i + 4].set_xlim([ 5.1, 20.1 ]) axs[i+4].set_title(str(title[i+4])) axs [i+4 ].set_xlabel('Time [ms]', fontsize=labelfontsize) if Fig4_Extracted_data == 1: for i in range(8): filename0 = 'Fig4_origin_%da.csv' % (i + 1) data_folder = Path("Fig4_extracted_data") file0_to_open = data_folder / filename0 data = pd.read_csv(file0_to_open) y_d0 = data [ 'Curve1' ] x_d0 = data [ 'x' ] filename = 'Fig4_origin_%db.csv' % (i + 1) file_to_open = data_folder / filename data = pd.read_csv(file_to_open) y_d = data [ 'Curve1' ] x_d = data [ 'x' ] if i == 3 or i == 7: axs [ i ].plot(5+x_d0, y_d0, 'b*') axs [ i ].plot(5+x_d, y_d, 'r*') elif i == 2 or i == 6: axs [ i ].plot(0.8+x_d0, y_d0, 'b*') axs [ i ].plot(0.8+x_d, y_d, 'r*') elif i == 0 : axs [ i ].plot(0.6+x_d0, y_d0, 'b*') axs [ i ].plot(0.6+x_d, y_d, 'r*') elif i == 5 : axs [ i ].plot(x_d0, y_d0, 'b*') axs [ i ].plot(0.9+x_d, y_d, 'r*') elif i == 4 : axs [ i ].plot(1+x_d0, y_d0, 'b*') axs [ i ].plot(x_d, y_d, 'r*') else: axs [ i ].plot(x_d0, y_d0, 'b*') axs [ i ].plot(x_d, y_d, 'r*') figfiles = '%s.png' % (prefig) plt.savefig(figfiles) figfiles = '%s.pdf' % (prefig) plt.savefig(figfiles) axs [0].set_ylabel('Vm [mV]', fontsize=labelfontsize) axs [4].set_ylabel('Ca ($\mu$M)', fontsize=labelfontsize) figfiles = '%s.png' % (prefig) plt.savefig(figfiles) plt.show()