# Author: Leyla Noroozbabaee # Date: 12/12/2021 # To reproduce Figure 9 from original paper, the python file 'Fig9_sim.py' should be run. import matplotlib.pyplot as plt import pandas as pd from sklearn import preprocessing import numpy as np # Figure name prefilename = 'Fig9' # Set figure dimension (width, height) in inches. fw, fh = 15, 10 # Set subplots subpRow, subpCol = 2,2 ax, lns = {}, {} # This gives list with the colors from the cycle, which you can use to iterate over. cycle = plt.rcParams [ 'axes.prop_cycle' ].by_key() [ 'color' ] # Set subplots lfontsize, labelfontsize = 10, 15 # legend, label fontsize fig, axs = plt.subplots(subpRow, subpCol, figsize=(fw, fh), facecolor='w', edgecolor='k') fig.subplots_adjust(hspace = .3, wspace=.3) axs = axs.ravel() I_V = [] prefilename = 'Fig9' varName = np.array([ "Time", "ik1", "ik2", "iBKa", "iBKab", "ika", "ib", "v", "I_K_tot" ,"xabtc"]) sub =['A','B','C'] v_clamp = [ 70,60,50,40,30,20,10,0,-10,-20,-30,-40 ] v_hold = [ -40,-80 ] Max_I_K = [] Max_Inactv = [] for i in range(len(v_hold)): for j in range(len(v_clamp)): filename = '%s_%s_%s.csv' % (prefilename, sub [ i ], j) print(filename) data = pd.read_csv(filename) time = data [ varName[0] ] ik1_data = data [varName[1]] ik2_data = data [varName[2]] iBKa_data = data [varName[3]] iBKab_data = data [varName[4]] ika_data = data [varName[5]] ib_data = data [varName[6]] v_data = data [varName[7]] I_K = data [ varName [8]] xabtc = data [ varName [9] ] Max_I = max(I_K) Max_I_K.append(Max_I) max_inact = max(xabtc) Max_Inactv.append( max_inact) I_K_tot = + ik1_data + ik2_data + ika_data + 0.7*iBKa_data + 0.3*iBKab_data + ib_data axs [ 3 ].plot(time, iBKab_data, 'g') axs [ 3-i ].plot(time, I_K , color=cycle [ j % 8 ]) if j==4 and i==1: ik_TEA = ika_data axs [ 0 ].plot(time, I_K, 'k', time, ik_TEA, '-k') axs [ 1 ].plot(v_clamp*2, np.array(Max_I_K)/20.49, '*k') for i in range(4): axs [ i ].set_xlabel('Time (ms)', fontsize=labelfontsize) axs [ i ].set_ylabel('I (normalised)', fontsize=labelfontsize) plt.show() prefilename = 'Figure_9'