Listing of exposures

NCE protein knowledge page
Lees_Green_2014
Human whole-body with embedded organs using automatic workflow for inserting the organs
Kidney knowledge
Calvo-Gallego, Pivonka, Ruiz-Lozano, Martínez-Reina, 2022
Argon SDS Demo
Generic human spinal nerves scaffold
Generic human spinal nerves scaffold
Generic human spinal nerves scaffold
FAIR DOs example 4.2
Sampson-Iyer-Marks-Kass-2010
Generic Mouse Bladder Scaffold
Generic Mouse Bladder Scaffold
Cardiovascular systems model
NCE - The Physics of Physiology
Ryanodine receptor knowledge page
Intestine knowledge
Cervical Vertebra 2
Cervical Vertebra 3
Cervical Vertebra 7
Cervical Vertebra 6
Intervertebral Disc of C5
Intervertebral Disc of C7
Modeling the Recruitment and Synchronization of SMCs (Koenigsberger et al. 2004)
Modeling the Recruitment and Synchronization of SMCs (Koenigsberger et al. 2004)
Blood volume control model
Blood volume control model
K ATP protein knowledge page
Lumbar Vertebrae 2
Lumbar Vertebrae 3
Lumbar Vertebrae 5
Intervertebral disc of C3
Intervertebral disc of T3
Intervertebral disc of T4
Intervertebral disc of T6
Intervertebral disc of T7
Intervertebral disc of T8
Intervertebral disc of T10
Intervertebral disc of T11
Intervertebral disc of T12
Intervertebral disc of L2
Intervertebral disc of L3
Intervertebral disc of L4
Lumbar spine
Na channel knowledge page
Potassium delayed rectifier channel knowledge page
CaL protein knowledge page
BG PMCA uSMC
ECC_MSK (Rios et al. 1993)
ECC_MSK (Rios et al. 1993)
Thoracic Vertebrae 5
Thoracic Vertebrae 9
Thoracic Vertebrae 11
MSM: Whole body scale
MSM: Tissue scale
MSM: Cellular scale
BG_crossbridge_TRPN
Kobro-Flatmoen & Omholt 2024
CAPITATE
CAPITATE
DISTAL_PHALANX_I
DISTAL_PHALANX_I
DISTAL_PHALANX_II
DISTAL_PHALANX_II
DISTAL_PHALANX_III
DISTAL_PHALANX_IV
DISTAL_PHALANX_V
METACARPAL_I
METACARPAL_II
MIDDLE_PHALANX_II
MIDDLE_PHALANX_III
MIDDLE_PHALANX_IV
MIDDLE_PHALANX_V
PISIFORM
PROXIMAL_PHALANX_I
PROXIMAL_PHALANX_II
PROXIMAL_PHALANX_III
PROXIMAL_PHALANX_III
PROXIMAL_PHALANX_V
SCAPHOID
TRAPEZIUM
TRAPEZOID
A computational human atrial myofibroblast electrophysiological model
FCU_ExcitationContraction_Coupling
Mouse whole-body scaffold with embedded organs
Elbow joint
Hip joint
Knee joint
Cardiovascular model with the feedback loops
Cardiovascular model with the feedback loops
MSM: Blood pressure control
Large Scale Left Ventricular Shape Atlas Using Automated Model Fitting to Contours
mRNA expression levels in failing human hearts predict cellular electrophysiological remodeling: A population-based simulation study
Beeler, Reuter, 1977 uncertainty example
Fink, Slepchenko, Moraru, Watras, Schaff, Loew, 2000
Edwards, 2010
Edwards, 2010
Spronck, 2012
Bugenhagen 2010
Davies isAP 2012
A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry)
A single compartment model of pacemaking in dissasociated Substantia nigra neurons with hyperbolic tetrahedral geometry
paci_hyttinen_aaltosetala_severi_2013
paci_hyttinen_aaltosetala_severi_2013
Poh, 2012
Metabolic Component Library
FCU_guanylylCyclase
Thoracic Vertebrae 6
Thoracic Vertebrae 7
Thoracic Vertebrae 8
Thoracic Vertebrae 10
Thoracic Vertebrae 12
EAAT2 - The Physics of Physiology
CaT protein knowledge page
Bond graph CVS model
Generic human esophagus scaffold
Generic human esophagus scaffold
Generic human esophagus scaffold
Thoracic Vertebrae 2
Thoracic Vertebrae 4
A 3D human whole-body model with integrated organs, vasculature, musculoskeletal and nervous systems for mapping nerves
A 3D human whole-body model with integrated organs, vasculature, musculoskeletal and nervous systems for mapping nerves
A 3D human whole-body model with integrated organs, vasculature, musculoskeletal and nervous systems for mapping nerves
A 3D human whole-body model with integrated organs, vasculature, musculoskeletal and nervous systems for mapping nerves
Generic human dorsal root ganglion scaffold
Generic human dorsal root ganglion scaffold
Generic human dorsal root ganglion scaffold
Generic human dorsal root ganglion scaffold
Generic human trigeminal nerve scaffold
Generic human trigeminal nerve scaffold
Generic human trigeminal nerve scaffold
BG_GPCR_M2_reduced
CaB protein knowledge page
Lumbar Vertebrae 1
Lumbar Vertebrae 4
Intervertebral disc of T1
Intervertebral disc of T2
Intervertebral disc of T5
Thoracic spine
Intervertebral disc of L1
Generic pig lung
Generic pig lung
Generic pig lung
Generic pig lung
Generic pig lung
Generic pig lung
Generic sheep brainstem
Generic sheep brainstem
Generic sheep brainstem
Generic sheep brainstem
Generic pig brainstem scaffold
Generic pig brainstem scaffold
Generic pig brainstem scaffold
Generic pig brainstem scaffold
Model of Excitation-Contraction in a uterine SMC
Model of Excitation-Contraction in a uterine SMC
NKE pump - The Physics of Physiology
BG_LRGbinding_B1AR
NHE1 - The Physics of Physiology
Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011 - Reduced Model
BPS2020 model
Biceps femoris long
Biceps femoris short
Gastrocnemius
Gracilis
Popliteus
Rectus femoris
Sartorius
Semimembranosus
Semitendinosus
Vastus Intermedius
Vastus lateralis
Vastus medialis
Abductor digiti minimi
Abductor pollicis brevis
Abductor pollicis longus
Anconeus
Biceps brachii
Brachialis
Brachioradialis
Coracobrachialis
Dorsal interossei I
Dorsal interossei II
Dorsal interossei III
Dorsal interossei IV
Extensor carpi radialis brevis
Extensor carpi radialis longus
Extensor carpi ulnaris
Extensor digiti minimi
Extensor digitorum
Extensor indicis
Extensor pollicis brevis
Extensor pollicis longus
Flexor carpi radialis
Flexor carpi ulnaris
Flexor digiti minimi
Flexor digitorum profundus
Flexor digitorum superficialis
Flexor pollicis brevis
Flexor pollicis longus
Infraspinatus
Lumbrical I
Lumbrical II
Lumbrical III
Lumbrical IV
Opponens digiti minimi
Opponens pollicis
Palmar interossei I
Palmar interossei II
Palmaris brevis
Pronator teres
Triceps brachii
Gastrocnemius
Digastricus Anterior
DIGASTRICUS POSTERIOR
Geniohyoideus
Longus Capitis
Longus Colli Inferior
Longus Colli Superior
Longus Colli Vertical
Mylohyoideus
Omohyoideus
Pharyngeal Constrictor
Platysma
Rectus Capitis Anterior
Rectus Capitis Lateralis
Scalenus Anterior
Scalenus Medius
Scalenus Posterior
Splenius Capitis
Sternocleidomastoid
Sternohyoideus
Sternothyroideus
Stylohyoideus
Thyrohyoideus
Trapezius
Digastric
Geniohyoid
Lateral Pterygoid Left
Lateral Pterygoid Right
Masseter Left
Masseter Right
Medial Pterygoid Left
Medial Pterygoid Right
Mylohyoid
Temporalis Left
Temporalis Right
Metabolite-sensitive cross-bridge models of human atria
Metabolite-sensitive cross-bridge models of human atria
SERCA protein knowledge page
Proton pump - The Physics of Physiology
SLC transporters
SLC transporters
SLC transporters
SLC transporters
SLC transporters
argon cube demo
Heijman et al. 2011
Heijman et al. 2011
Kernik et al. 2019
NBCe1 - The Physics of Physiology
HKE - The Physics of Physiology
Kp protein knowledge page
KTO knowledge page
AE3 - The Physics of Physiology
GLUT demo for CFDE Summer School in Mechanistic Modeling for PBPK Transport
Generic mouse heart scaffold
Generic mouse heart scaffold
Generic mouse heart scaffold
NKE knowledge page
KACh protein knowledge page
Generic mouse brainstem scaffold
Generic mouse brainstem scaffold
Generic mouse brainstem scaffold
Generic mouse brainstem scaffold
ABC transporter protein knowledge page
FCU_adenylylCyclase
BG_fast_Na
A Simple Voltage-Modulated Markov Chain Model for the Piezo1 Ion Channel to Investigate Electromechanical Pacing
A Simple Voltage-Modulated Markov Chain Model for the Piezo1 Ion Channel to Investigate Electromechanical Pacing
BG_CO2_hydration
BG_to_channel
Generic pig stomach scaffold
Generic pig stomach scaffold
Generic pig stomach scaffold
Generic pig stomach scaffold
Generic pig stomach scaffold
BG_funny
Generic human small intestine scaffold
Generic mouse small intestine scaffold
Iyer, Mazhari, Winslow, 2004
KIR protein knowledge page
Single PASMC model (Gosak et al 2014)
Single PASMC model (Gosak et al 2014)
Single PASMC model (Gosak et al 2014)
Generic mouse stomach scaffold
Generic mouse stomach scaffold
Generic mouse stomach scaffold
Generic mouse stomach scaffold
Generic mouse stomach scaffold
BG_Inhib1
Generic Pig Bladder Scaffold
Generic Pig Bladder Scaffold
Carro, Rodriguez, Laguna, Pueyo (2011)
Linear 2nd order nonhomogeneous ODE with constant coefficients
Cell viability models for tissue exposed to thermal ablation temperatures.
Cell viability models for tissue exposed to thermal ablation temperatures.
Combine Archive Example
Models for the OpenCOR and PMR tutorial by Peter Hunter
Faber, Rudy, 2000 and Tong, Ghouri, Taggart, 2014
Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011
Tong, Tribe, Smith, Taggart, 2014
Gattoni 2016
Na+/H+ Exchanger
Anion Exchanger
H+-ATPase (proton pump)
Na+/K+-ATPase (sodium-potassium pump)
Na+/HCO3- Cotransporter
Synchronized Scene Viewer
Basket Catheter Emulator
Moore, Li, 2004
Alexander and Wahl 2010
Benson 2008
Wodarz, Hamer, 2007
Bertram, Rhoads and Cimbora 2008
Butera, Rinzel, Smith, 1999
Vasalou and Henson 2010
Novak, Tyson, 1993
Cui, Kaandorp, 2006
Goldbeter Dupont Berridge 1990
A single compartment model of pacemaking in dissasociated Substantia nigra neurons with hyperbolic tetrahedral geometry
Aguda, B, 1999
Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
Aslanidi 2009
Bagci 2008
Barberis, Klipp, Vanoni, Alberghina, 2007
Bental, 2006
Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
Kholodenko, Demin, Moehren, Hoek, 1999
A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry)
A 0D model of the Heart
Varela - Canine Atrial Cell Models
Computational analysis of the human sinus node action potential: model development and effects of mutations
Computational analysis of the human sinus node action potential: model development and effects of mutations
Computational analysis of the human sinus node action potential: model development and effects of mutations
Computational analysis of the human sinus node action potential: model development and effects of mutations
Computational analysis of the human sinus node action potential: model development and effects of mutations
BG Mica models
Noble 1962 model for Physiome article
Tran 2017 - Cross-bridge model of shortening heat
A model of intracellular pH control
A model of intracellular pH control
A model of intracellular pH control
Atrial fibroblast model
SED-ML example
Hill, 1972 - a model of feto-maternal oxygen exchange
O'Hara-Rudy-CiPA-v1.0 (2017)
HH Sodium Current model for estimation task
Steady state HMT
Epithelial Transport
Video to heart fitting
Loewe-Lutz-Fabbri-Severi human sinus node cellular electrophysiology model
paci_hyttinen_aaltosetala_severi_2013
Grandi et al. 2011 Atrial Action Potential and Ca2+ Model
Grandi et al. 2011 Atrial Action Potential and Ca2+ Model
A Model of Cardiac Electrical Activity Incorporating Ionic Pumps and Concentration Changes, DiFrancesco, Noble, 1985
Ni et al. 2017 Human atrial model
Ni et al. 2017 Human atrial model
Ni et al. 2017 Human atrial model
Fenton, Karma, 1998
Fenton, Karma, 1998
A computational human ventricular electrophysiological model
McIntyre, Richardson, Grill, 2001
Maleckar, Greenstein, Trayanova, Giles, 2009
Tentusscher, Panfilov, 2006
Tentusscher, Noble, Noble, Panfilov, 2004
Generic mouse colon scaffold
Generic mouse colon scaffold
Generic mouse colon scaffold
Generic mouse colon scaffold
Generic pig colon scaffold
Generic pig colon scaffold
Generic pig colon scaffold
Generic pig colon scaffold
Generic human colon scaffold
Generic human colon scaffold
Generic human colon scaffold
Generic human colon scaffold
Generic rat stomach scaffold
Generic rat stomach scaffold
Generic rat stomach scaffold
Generic rat stomach scaffold
Generic rat stomach scaffold
Generic rat stomach scaffold
Generic rat stomach scaffold
Generic rat heart scaffold
Generic rat heart scaffold
Generic rat heart scaffold
Generic rat heart scaffold
Generic rat bladder scaffold
Generic rat bladder scaffold
Generic rat bladder scaffold
Generic cat bladder scaffold
Generic cat bladder scaffold
Generic cat bladder scaffold
Generic cat bladder scaffold
Generic pig heart scaffold
Generic pig heart scaffold
Generic pig heart scaffold
Generic pig heart scaffold
Generic human heart scaffold
Generic human heart scaffold
Generic human heart scaffold
Generic human heart scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic mouse lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
Generic human lung scaffold
rat flatmap
rat flatmap
Koivumäki, Korhonen, Tavi 2011 Atrial AP model
Koivumäki, Korhonen, Tavi 2011 Atrial AP model
Voigt, Heijman et al. 2013 human atrial AP model
Voigt, Heijman et al. 2013 human atrial AP model
Rat whole body scaffold
Jafri, Rice, Winslow, 1998
Hodgkin & Huxley (1952) model
Wang, Sobie, 2008
Rat whole-body scaffold with embedded organs
Generic human stomach scaffold
Generic human stomach scaffold
Generic human stomach scaffold
Generic human stomach scaffold
Generic human stomach scaffold
Generic human stomach scaffold
Carro, Rodriguez, Laguna, Pueyo (2011)
Carro, Rodriguez, Laguna, Pueyo (2011)
Generic human bladder scaffold
Generic human bladder scaffold
Generic rat lung scaffold
Generic rat lung scaffold
Generic rat lung scaffold
Generic rat lung scaffold
Generic rat lung scaffold
Generic rat lung scaffold
Model of Human Jejunal Smooth Muscle Cell Electrophysiology
Model of Human Jejunal Smooth Muscle Cell Electrophysiology
Generic human brainstem scaffold
Generic human brainstem scaffold
Generic human brainstem scaffold
Generic human brainstem scaffold
Generic rat brainstem scaffold
Generic rat brainstem scaffold
Generic rat brainstem scaffold
Generic rat brainstem scaffold
Human whole-body scaffold with embedded organs
Human whole-body scaffold with embedded organs
Human whole-body scaffold with embedded organs
Standard Virtual Parts Template Models v200906
Tutorial on Constructing a Systems Model from SVPs
A review of cardiac cellular electrophysiology models
Adrian, Chandler, Hodgkin, 1970
Aguda, B, 1999
Aguda, Tang, 1999
Albrecht, Colegrove, Friel, 2002
Albrecht, Colegrove, Hongpaisan, Pivovarova, Andrews, Friel, 2001
Alexander and Wahl 2010
Aon, Cortassa, 2002
Aslanidi Atrial Model 2009
Aslanidi 2009
Asthagiri, Lauffenburger, 2001
Bagci 2006
Bagci 2008
Bakker, Mensonides, Teusink, Vanhoek, Michels, Westerhoff, 2000
Bakker, Michels, Opperdoes, Westerhoff, 1997
Barberis, Klipp, Vanoni, Alberghina, 2007
Baylor, Hollingworth, Chandler, 2002
Beard, 2005
Beeler, Reuter, 1977
Benson 2008
Bental, 2006
Bernus, Wilders, Zemlin, Verschelde, Panfilov, 2002
Bertram, Arnot, Zamponi, 2002
Bertram, Pedersen, Luciani and Sherman 2006
Bertram, Previte, Sherman, Kinard, Satin, 2000
Bertram, Satin, Pedersen, Luciani, Sherman, 2007
Bertram, Satin, Zhang, Smolen, Sherman, 2004
Bertram, Sherman, 2004
Bertram, Smolen, Sherman, Mears, Atwater, Martin, Soria, 1995
Bhalla, Iyengar, 1999
Bindschadler, Sneyd, 2001
Bingzheng, Zhenye, Liansong, 1990
Bondarenko, Szigeti, Bett, Kim, Rasmusson, 2004
Bonhoeffer, Rembiszewski, Ortiz, Nixon, 2000
Borghans 1997
Bornheimer et al. 2004
Boyett, Zhang, Garny, Holden, 2001
Brightman, Fell, 2000
Brown, Choe, Shanahan, Czeisler, 1997
Bueno, 2007
Bugbuster Standard Virtual Biological Machine
Butera, Rinzel, Smith II 1999
Butera, Rinzel, Smith II 1999
Calzone, Thieffry, Tyson, Novak, 2007
Campbell, Chandra, 2006
Cardiovascular Circulation DVad
Cardiovascular Circulation IVad
Cardiovascular Circulation Systemic
Cardiovascular Circulation Westkessel
Cartwright, Husain, 1986
Chang, Fujita, 1999
Chang, Fujita, 1999
Chang, Fujita, 2001
Chang, Fujita, B, 1999
Chassagnole, Rais, Quentin, Fell, Mazat, 2001
Chay, 1997
Chay, Lee, Fan, 1995
Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
Chen, Csikasz-Nagy, Gyorffy, Val, Novak, Tyson, 2000
Chen, Popel, 2006
Chen, Popel, 2007
Cheng, Brown, Loeb, 2000
Ciliberto, Novak, Tyson, 2003
Ciliberto, Petrus, Tyson, Sible, 2003
Ciliberto, Tyson, 2000
Clancy, Rudy, 2001
Clancy, Rudy, 2002
Cloutier 2009
Cloutier Wellstead 2009
Colegrove, Albrecht, Friel, 2000
Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff and Snoep, 2010
Cooling, Hunter, Crampin, 2007
Cooling, Hunter, Crampin, 2009
Cooling, Hunter, Crampin, 2009
Cooling, Hunter, Crampin, 2009
Cooling, Hunter, Crampin, Cellml, 2008
Corrias, Buist, 2007
Corrias, Buist, 2008
Cortassa, Aon, Marban, Winslow, Orourke, 2003
Cortassa, Aon, Winslow, Orourke, 2004
Costa, Holmes, Mcculloch, 2001
Courtemanche, Ramirez, Nattel, 1998
Cronwright, Rohwer, Prior, 2002
Csilkasz-Nagy 2006
Cui, Kaandorp, 2006
Cui, Kaandorp, 2008
Cui, Kaandorp, Lloyd, 2008
Curien, Ravanel, Dumas, 2003
Dash, Bassingthwaighte, 2004
David Cumin PhD Model
Dawson, Lea, Irvine, 2003
Decker 2009
Deforming Heart
Demir, Clark, Giles, 1999
Demir, Clark, Giles, Murphey, 1994
Demiray, 1981
Dempsher, Gann, Phair, 1984
Depaor, Timmons, 1986
Devries, Sherman, 2000
Devries, Sherman, 2001
Deyoung, Keizer, 1992
Difrancesco, Noble, 1985
Dijkstra, Neal, Beever and France, 1992
Dixit, Perelson, 2004
Dokos, Celler, Lovell, 1996
Dougherty, Wright, Yew, 2005
Drouhard, Roberge, 1987
Dumaine, Towbin, Brugada, Vatta, Nesterenko, Nesterenko, Brugada, Brugada, Antzelevitch, 1999
Dupont Berridge Goldbeter 1991
Dupont Goldbeter 1992
Earm, Noble, 1990
Ebihara, Johnson, 1980
Egli, Bertram, Sellix, Freeman, 2004
ElectrEcoBlu Standard Virtual Biological Machine
Elowitz, Leibler, 2000
Enciso, Sontag, 2004
Endresen, 1996
Eskandari, Wright, Loo 2005
Eskandari, Wright, Loo 2005
Eskandari, Wright, Loo 2005
Eskandari, Wright, Loo 2005
Espinosa, 1998
Evans, Errington, Shelly, Feeney, Chapman, Godfrey, Smith, Chappell, 2004
Faber, Rudy, 2000
Fall, Keizer, 2001
Fallon, Lauffenburger, 2000
Farhy, Bowers, Veldhuis, 2007
Farhy, Bowers, Veldhuis, 2007
Faville, Pullan, Sanders, Koh, Lloyd, Smith, 2009
Faville, Pullan, Sanders, Smith, 2008
Fink, Noble, Virag, Varro, Giles, 2008
Fink, Slepchenko, Loew, 1999
Fitzhugh, 1961
Flynn, Green, Pedley, Boxer, Dearling, Watson, Boden, Begent, 2002
Fohlmeister, Miller, 1997
Fox, Mcharg, Gilmour, 2002
Fridlyand, Tamarina, Philipson, 2003
Friel, 1995
Fujita, Toyoshima, Uda, Ozaki, Kubota and Kuroda 2010
Gall, Susa, 1999
Gardner, Dolnik, Collins, 1998
Garmendia-Torres, Goldbeter and Jacquet 2007
Garny, Kohl, Hunter, Boyett, Noble, 2003
Gasser, Ogden, Holzapfel, 2006
Gerard and Goldbeter 2009
Gilbert, Heiner, Rosser, Fulton, Gu, Trybilo, 2007
Goforth, Bertram, Khan, Zhang, Sherman, Satin, 2002
Goldbeter, 1991
Goldbeter, 1995
Goldbeter 2006
Goldbeter Dupont Berridge 1990
Goldbeter, Gonze and Pourquie 2007
Goldbeter, Pourquie, 2008
Gonzalezheydrich, Steingard, Kohane, 1994
Goodwin, 1965
Grandi, Pasqualini and Bers, 2010
Grange 2001
Greenstein, Wu, Po, Tomaselli, Winslow, 2000
Grossman, Feinberg, Kuznetsov, Dimitrov, Paul, 1998
Guccione, Mcculloch, Waldman, 1991
Gupta, Aslakson, Gurbaxani, Vernon, 2007
Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
Guyton, Full cardiovascular circulation model
Guyton, Aldosterone, 2008
Guyton, Angiotensin, 2008
Guyton, Antidiuretic, Hormone, 2008
Guyton, Atrial, Natriuretic, Peptide, 2008
Guyton, Autonomics, 2008
Guyton, Capillary, Dynamics, 2008
Guyton, Circulatory, Dynamics, 2008
Guyton, Electrolytes, 2008
Guyton, Heart Hypertrophy or Deterioration, 2008
Guyton, Heart, Rate, And, Stroke, Volume, 2008
Guyton, Kidney, 2008
Guyton, Muscle, Blood, Flow, Control, 2008
Guyton, Muscle, Oxygen, Delivery, 2008
Guyton, Non, Muscle, Blood, Flow, Control, 2008
Guyton, Non, Muscle, Oxygen, Delivery, 2008
Guyton, Pulmonary, Fluid, Dynamics, 2008
Guyton, Pulmonary, Oxygen, Uptake, 2008
Guyton, Red, Cells, And, Viscosity, 2008
Guyton, Stress, Relaxation, 2008
Guyton, Thirst, Drinking, And, Salt, Appetite, 2008
Guyton, Volume, Receptors, 2008
Hai and Murphy 1988
Halloy, Bernard, Loussouarn, Goldbeter, 2002
Hatakeyama, Kimura, Naka, Kawasaki, Yumoto, Ichikawa, Kim, Saito, Saeki, Shirouzu, Yokoyama, Konagaya, 2003
Hatzimanikatis, Lee, Bailey, 1999
Haugh, 2004
Heart Model
Heinze, Keener, Midgley, 1998
Heldt 2002
Herz, Bonhoeffer, Anderson, May, Nowak, 1996
Heyd, Drew, 2003
Hilgemann, Noble, 1987
Hinch, Greenstein, Tanskanen, Xu, Winslow, 2004
Hodgkin, Huxley, 1952
Hoefnagel, Starrenburg, Martens, Hugenholtz, Kleerebezem, Vanswam, Bongers, Westerhoff, Snoep, 2002
Holmes 2006
Hornberg, Binder, Bruggeman, Schoeberl, Heinrich, Westerhoff, 2005
Houart, Dupont and Goldbeter 1999
Huang, Ferrell, 1996
Hund, Rudy, 2004
Hunter, Mcculloch, Terkeurs, 1998
Hunter, Mcnaughton, Noble, 1975
Hunter, Smaill, Hunter, 1995
Hynne, Dano, Sorensen, 2001
Iancu 2007
Iancu 2007
Iber, Maini, 2002
Inada 2009
International, Si, Units, 2006
Iribe, Kohl, Noble, 2006
Irvine, Jafri, Winslow, 1999
Itskov, Ehret, Mavrilas, 2006
Iyer, Hajjar, Armoundas, 2007
Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991
Jafri, Rice, Winslow, 1998
Jelic, Cupic, Kolaranic, 2005
Joseph, Zavros, Merchant, Kirschner, 2003
Karagiannis, Popel, 2004
Karagiannis, Popel, 2006
Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004
Keener, 2001
Keizer, Levine, 1996
Kesmir, Deboer, 1999
Kholodenko, Demin, Moehren, Hoek, 1999
Kirschner, Panetta, 1998
Kirschner, Webb, 1996
Kneller, Ramirez, Chartier, Courtemanche, Nattel, 2002
Koivumaki,2009
Komarova 2005
Komarova, Smith, Dixon, Sims and Wahl, 2003
Komarova, Wodarz, 2003
Kongas, Vanbeek, 2001
Korzeniewski, Zoladz, 2001
Kroll, 2000
Kurata, Hisatome, Imanishi, Shibamoto, 2002
Kyrylov, Severyanova, Vieira, 2005
Lambeth, Kushmerick, 2002
Funny current channel knowledge page
Kernik_physiome
Stewart, Aslanidi, Noble, Noble, Boyett, Zhang, 2009
VITAL 2.2 arterial wall growth knowledge page
Landesberg, Sideman, 1994
Lebeau, Robson, Mckinnon, Donald, Sneyd, 1997
Lebeau, Yule, Groblewski, Sneyd, 1999
Leloup, Goldbeter, 1998
Leloup, Goldbeter, 2003
Leloup, Goldbeter, 2004
Leloup, Gonze, Goldbeter, 1999
Lemaire, Tobin, Greller, Cho, Suva, 2004
Lemon, Gibson, Bennett, 2003
Lenbury, Pacheenburawana, 1991
Lenbury, Pornsawad, 2005
Lenbury, Ruktamatakul, Amornsamarnkul, 2001
Li, Bertram and Rinzel, 1996
Li, Kuang, Mason, 2006
Li, Rinzel, 1994
Li, Smith, 2009
Lindblad, Murphey, Clark, Giles, 1996
Liu, Hu, Peng, Liu, 1999
Volume mesh of liver
Livshitz, Rudy, 2007
Lockwood, Ewy, Hermann, Holford, 2006
Lokta, Volterra
Lovell, Cloherty, Celler, Dokos, 2004
Luo, Rudy, 1991
Luo, Rudy, 1994
Luo, Rudy, 1994
Macgregor, Leng, 2005
Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996
Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996
Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996
Magnus, Keizer, 1997
Magnus, Keizer, 1998
Mahajan, Shiferaw, Sato, Baher, Olcese, Xie, Yang, Chen, Restrepo, Karma, Garfinkel, Qu, Weiss, 2008
Maldonado, Borchers, Findeisen and Allgower, 2006
Maleckar, Greenstein, Trayanova, Giles, 2009
Maltsev 2009
Maly, Wiley, Lauffenburger, 2004
Margaridamartins, Mendes, Coreiro, Pocesfreire, 2001
Marhl, Haberichter, Brumen, Heinrich, 2000
Marhl, Schuster, Brumen, Heinrich, 1997
Martinov, Vitvitsky, Mosharov, Banerjee, Ataullakhanov, 2000
Marwan, 2003
Matsuoka, Sarai, Kuratomi, Ono, Noma, 2003
Maurya et al. 2005
Mazhari, Greenstein, Winslow, Marban, Nuss, 2001
Mcallister, Noble, Tsien, 1975
Mckenzie, Sneyd, 1998
Mclean, Su, Vandenbogert, 2003
Mears 1997
Michailova, Mcculloch, 2001
Michailova 2005
Miftakhov, Abdusheva, Christensen, 1999
Mijailovich, Butler, Fredburg, 2000
Mikane, Araki, Kohno, Nakayama, Suzuki, Shimuzi, Matsubara, Hirakawa, Takaki, Suga, 1997
Mitchell, Schaeffer, 2003
Mittler, Sulzer, Neumann, Perelson, 1998
Mlcek, Neumann, Kittnar, Novak, 2001
A Primer on Modular Mass Action Modelling with CellML
Mohr, Taylor, Newell, 2008
Morris and Lecar 1981
Mosekilde, Lading, Yanchuk, Maistrenko, 2001
Moss, Kazmierczak, Kirley, Harris, 2009
Muller, Obeyesekere, Mills, Ram, 2008
Nagano and Gerritsen, 2001
Nagerl, Novo, Mody, Vergara, 2000
Nash, Panfilov, 2004
Nazaret, Heiske, Thurley and Mazat, 2009
Nelson, Murray, Perelson, 2000
Nelson, Perelson 1995
Renal Transport
Renal Transport
Neumann, Lam, Dahari, Gretch, Wiley, Layden, Perelson, 1998
Nevo, Golding, Neumann, Schwartz, Akselrod, 2004
Niederer, Hunter, Smith, 2006
Niederer, Smith, 2007
Noble, 1962
Noble, 2000
Noble, Difrancesco, Denyer, 1989
Noble, Noble, 1984
Noble, Noble, 2001
Noble, Noble, Bett, Earm, Ho, So, 1991
Noble, Varghese, Kohl, Noble, 1998
Novak, Csikasznagy, Gyorffy, Chen, Tyson, 1998
Novak, Pataki, Ciliberto, Tyson, 2001
Novak, Tyson, 1993
Novak, Tyson, 1997
Novak, Tyson, 2004
Nowak, Bangham, 1996
Nygren, Fiset, Firek, Clark, Lindblad, Clark, Giles, 1998
Obeyesekere, Zimmerman, Tecarro, Auchmuty, 1999
Olsen, Hauser, Kummer, 2003
Oomens, Maenhout, Vanoijen, Drost, Baaijens, 2003
Ostby, Oyehaug, Einevoll, Nagelhus, Plahte, Zeuthen, Voipio, Lloyd, Ottersen, Omholt, 2008
Overgaard 2007
Oyehaug, Ostby, Lloyd, Omholt, Einevoll, 2011
Oyehaug, Ostby, Lloyd, Ottersen, Omholt, Einevoll, 2009
Palecek, Horwitz, Lauffenburger, 1999
Pandit, Clark, Giles, Demir, 2001
Pandit, Giles, Demir, 2003
Panerai, 1980
Parent, Supplisson, Loo, Wright, 1992
Pasek, Simurda, Christe, 2006
Pasek, Simurda, Orchard, Christe, 2008
Pedersen, Bertram, Sherman, 2005
Per Pixel Lighting
Perelson 1993
Perelson, Neumann, Markowitz, Leonard, Ho, 1996
Phillips 2007
Phillips 2008
Pivonka, Zimak, Smith, Gardiner, Dunstan, Sims, Martin and Mundy, 2008
Plant, 1981
Potter, Greller, Cho, Nuttall, Stroup, Suva, Tobin, 2005
Potter, Zager, Barton, 2006
Priebe, Beuckelmann, 1998
Proctor, 2005
Proctor, 2007
Puglisi, Bers, 2001
Purvis, Butera, 2005
Purvis, Smith, Koizumi, Butera, 2007
Qu, Maclellan, Weiss, 2003
Ralser at el. 2007
Ramirez, Nattel, Courtemanche, 2000
Rangamani 2007
Raposo, Sobrinho and Ferreira, 2002
Rattananakul, Lenbury, Krishnamara, Wollkind, 2003
Razumova, Bukatina, Campbell, 1999
Razumova, Bukatina, Campbell, 2000
Reed, Nijhout, Sparks, Ulrich, 2004
Reidl, Borowski, Sensse, Starke, Zapotocky, Eiswirth, 2006
Revilla, Garcia-Ramos, 2003
Riccobene, Omann, Linderman, 1999
Rice, Jafri, Winslow, 2000
Rice, Wang, Bers, Detombe, 2008
Rice, Winslow, Hunter, 1999
Rice, Winslow, Jafri, 1999
Riemer, Sobie, Tung, 1998
Rivlin, Saunders, 1951
Rogers, Mcculloch, 1994
Romond, Rustici, Gonze, Goldbeter, 1999
Rong, Perelson 2009
Roux, Noble, Noble, Marhl, 2006
Rubin, Shevtsova, Ermentrout, Smith and Rybak 2009
Sachse, Glanzel, Seemann, 2003
Sachse, Moreno, Abildskov, 2008
Saftenku, Williams, Sitsapesan, 2001
Sakmann, Spindler, Bryant, Linz, Noble, 2000
Salem, Saidel, Stanley, Cabrera, 2002
Sarai, Matsuoka, Kuratomi, Ono, Noma, 2003
Sarkar, Lauffenburger, 2003
Saucerman, Bers, 2008
Saucerman, Brunton, Michailova, Mcculloch, 2003
Saucerman, Mcculloch, 2004
Schenzle 1994
Schlosser, Selgrade, 2000
Schmid, Nash, Young, Hunter, 2006
Schneider, Shimayoshi, Amano, Matsuda, 2006
Schoeberl, Eichler-Jonsson, Gilles, Muller, 2002
Schuster, Beny, Meister, 2003
Sedaghat, Sherman, Quon, 2002
Seemann, Sachse, Weib, Dossel, 2003
Shannon, Wang, Puglisi, Weber, Bers, 2004
Shaw, Chase, Starfinger, Smith, Hann, Desaive, Ghuysen, 2007
Shaw, Rudy, 1997
Shi, Hose, 2009
Shiferaw, Watanabe, Garfinkel, Weiss, Karma, 2003
Shorten, Ocallaghan, Davidson, Soboleva, 2007
Shorten, Robson, Mckinnon, Wall, 2000
Shorten, Wall, 2000
Shrestha, Hollot, Chipkin, Schmitt and Chait 2010
Siebert, Rode, Herzog, Till and Blickhan, 2008
Sine-Approximations
Skouibine, Trayanova, Moore, 1999
Smith, 1980
Smith, Abdala, Koizumi, Rybak and Paton 2007
Smith Chase 2004
Smith, Crampin, 2004
Sneyd, Dufour, 2002
Sneyd, Tsaneva-Atanasova, Yule, Thompson, Shuttleworth, 2004
Sneyd, Tsanevaatanasova, Bruce, Straub, Giovannucci, Yule, 2003
Snyed, Wetton, Charles, Sanderson, 1995
Snyder, Palmer, Moore, 2000
Sobie, Dilly, Dossantoscruz, Lederer, Jafri, 2002
Soboleva, Vetharaniam, Nixon, Montenegro, Pearson, Sneyd, 2005
Spiro, Parkinson, Othmer, 1997
Sriram, Bernot, Kepes, 2007
Starbuck, Wiley, Lauffenburger, 1990
Stern, Song, Sham, Yang, Boheler, Rios, 1999
Stewart, Aslanidi, Noble, Noble, Boyett, Zhang, 2009
Sthilaire, Gronfier, Zeitzer, Klerman, 2007
Stilianakis, Dietz, Schenzle, 1997
Surkis, Peskin, Tranchina, Leonard, 1998
Sveiczer, Csikasznagy, Gyorffy, Tyson, Novak, 2000
Swanson, True, Lin, Buhler, Vessella, Murray, 2001
Tabak, Mascagni and Bertram 2010
Tabak, Toporikova, Freeman, Bertram, 2007
Tentusscher, Noble, Noble, Panfilov, 2004
Tentusscher, Noble, Noble, Panfilov, 2006
Tentusscher, Panfilov, 2006
Terkildsen, Niederer, Crampin, Hunter, Smith, 2008
Teusink, Passarge, Reijenga, Esgalhado, Vanderweijden, Schepper, Walsh, Bakker, Vandam, Westerhoff, Snoep, 2000
Tham 2008
Thomas, 2000
Thomsen, Neubig, 1989
Tolic, Mosekilde, Sturis, 2000
Tomida, Hirose, Takizawa, Shibasaki, Iino, 2003
Topp, Promislow, Devries, Miura, Finegood, 2000
Tran 2010
Tran 2010
Tran, Smith, Loiselle, Crampin, 2009
Tyson, 1991
Tyson, Hong, Thron, Novak, 1999
Ueda, Hagiwara, Kitano, 2001
Vanbeek, 2007
Vancapelle, Durrer, 1980
Vanderpol, Vandermark, 1928
Vangoor, Lebeau, Krsmanovic, Sherman, Catt, Stojilkovic, 2000
Vasalou and Henson 2010
Vaseghi, Baumeister, Rizzi, Reuss, 1999
Vempati, Karagiannis, Popel, 2007
Vendelin, Kongas, Saks, 2000
Vilar 2006
Vilar, Kueh, Barkai, Leibler, 2002
Vinnakota, Kemp and Kushmerick, 2006
Vinnakota, Rusk, Palmer, Shankland and Kushmerick, 2010
Viswanathan, Shaw, Rudy, 1999
Wanant, Quon, 2000
Wang, Cirit and Haugh 2009
Wang, Huang, Huang, 2006
Wang, Li, Kuang, 2007
Wang, Lin, Lin, Wu, 2008
Wang, Sobie, 2008
Warashina, Ogura, 2004
Warren, Tawhai, Crampin, 2009
Waugh, Sherratt, 2006
Waugh, Sherratt, 2007
Webb, Sherratt, Fish, 2002
Wein, D'Amato, Perelson 1998
Weinstein, 1995
Weinstein, 1995
Weinstein, 1998
Weinstein 2000
Westermark, Lansner, 2003
Wierschem 2004
Wilkins, Sneyd, 1998
Winograd, Destexhe, Sanchezvives, 2008
Winslow, Rice, Jafri, Marban, Ororke, 1999
Winslow, Rice, Jafri, Marban, Ororke, 1999
Wodarz, 2003
Wodarz, Hamer, 2007
Wodarz, Jansen, 2003
Wodarz, Nowak, 1999
Wodarz, Sierro, Klenerman, 2007
Wolf, Heinrich, 2000
Wolf, Passarge, Somsen, Snoep, Heinrich, Westerhoff, 2000
Wolf, Sohn, Heinrich, Kuriyama, 2001
Wu, Jeneson, Beard, 2006
Wu, Yang, Vinnakota, Beard, 2007
Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996
Yanagihara 1980
Yang, Clark, Bryan, Robertson, 2003
Yang, Tong, Mccarver, Hines, Beard, 2006
Yasumura, Suga, 1988
Yates, Stark, Klein, Antia, Callard, 2007
Yi, Fogelson, Keener, Peskin, 2003
Youm, Kim, Han, Kim, Joo, Leem, Goto, Noma, Earm, 2006
Zager, Schlosser, Tran, 2007
Zeng, Laurita, Rosenbaum, Rudy, 1995
Zhang, Holden, Kodama, Honjo, Lei, Varghese, Boyett, 2000
Delta-Notch Intercellular Signalling
Andre's Hodgkin Huxley model
An encoding of the human ORd model by Steve Neiderer
An encoding of the human ORd model by Steve Neiderer
VPH-MIP case study on CellML
Cortassa et al (2006) ECME model
EMBC 2013 Tutorial - Noble 1962 reproducibility
EMBC 2013 Tutorial - Noble 1962 reproducibility
Approximating Sine Waves
Some test SED-ML to play with the nested proposal
Aslanidi_etal_2010
Land et al. 2012
Myocardial contractility and regional work throughout the cardiac cycle using FEM and MRI
Sulman et al. 2008
Virtual Bacterial Photography
Workflows for analysis of valvular and aortic disease
Deterministic Nonperiodic Flow
Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes
Covering a Broad Dynamic Range: Information Processing at the Erythropoietin Receptor
The Glucose-induced Switch Between Glycogen Phosphorylase and Glycogen Synthase in the Liver: Outlines of a Theoretical Approach
Latency correlates with period in a model for signal-induced Ca2+ oscillations based on Ca2+induced Ca2+ release
Simulations of the effects of inositol 1,4,5=trisphosphate 3-kinase and S-phosphatase activities on Ca+ oscillations
Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study
Dependence of the period on the rate of protein degradation in minimal models for circadian oscillations
Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
Mitochondria regulate the amplitude of simple and complex calcium oscillations
Dynamics of amino acid metabolism of primary human liver cells in 3D bioreactors
Switching from Simple to Complex Oscillations in Calcium Signaling
On the encoding and decoding of calcium signals in hepatocytes
Improvement of metabolic performance of primary hepatocytes in hyperoxic cultures by vitamin C in a novel small-scale bioreactor
Bifurcation analysis of the regulatory modules of the mammalian G1/S transition
Model of a rabbit Purkinje cell
Generic human gastrointestinal tract scaffold
Generic human cecum scaffold
BG_Na_background
Pig whole-body with embedded organs using automatic workflow for inserting the organs
FCU_cardiacAP_composite
NDCBE - The Physics of Physiology
Model of excitation-contraction in uterine myocytes from a pregnant rat
PMCA knowledge page
BG_HaiMurphy
Rat whole-body with embedded organs using automatic workflow for inserting the organs
BG_GPCR_B1AR_reduced
Extended Severi and Fabbri Model
Toward a comprehensive cardiomyocyte model
Toward a comprehensive cardiomyocyte model
BG Epithelial Transport
BG Epithelial Transport
NaB protein knowledge page
SERCA - The Physics of Physiology
The Physics of Physiology - Example 1: An electrical circuit
The Physics of Physiology - Example 3: An electromechanical system
The Physics of Physiology - Example 4: A simple biochemical reaction
The Physics of Physiology - Example 5: A biochemical reaction with mixed stoichiometry
The Physics of Physiology - Example 6: An enzyme-catalyzed reaction and Michaelis-Menten kinetics
FAIR DOs example 3.7
The Physics of Physiology - Example 2: A mechanical system
The Physics of Physiology - Example 8: Membrane ion channels
GLUT2 - The Physics of Physiology
SGLT1 - The Physics of Physiology
A physiologically based pharmacokinetic (PBPK) model of lindane for rats
Cervical spine
Thoracic Vertebrae 1
Thoracic Vertebrae 3
Cervical Vertebra 1
Cervical Vertebra 4
Cervical Vertebra 5
Intervertebral Disc of C3
Intervertebral Disc of C4
Intervertebral Disc of C6